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Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041129
species:
Theobroma cacao
miRNA family:
MIR319
source:
miRBase, original name:
tcc-MIR319
(
MI0017502
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGACTGAAGGGAGCTCCT
miRNA*
GGGCTCCTTTCAGCCTAAAAC
mismatches:
1
bulges:
0
View larger
pre-miRNA
TGAGAAATAATTAGAAGTGG
GGGCTCCTTTCAGCCTAAAAC
AGCTTCAAGATTTTGGTCTTGTGGCCTATCTAAGCTCTTCTTGATATTTGC
TTTGGACT
GAAGGGAGCTCCT
AATTCTTTATTTTCTCCGGT
dot-bracket secondary structure
.((((((.....((((.(((
(((((((((((((.(((((.(
((..((((((....((((....))))............))))))...))).
))))).))
)))))))))))))
).))))....))))))....
SIMILARITIES
miRBase
csi-MIR319
:
0.000000007
PMRD
vvi-miR319e
:
0.000002
microPC
miR319
:
0.0001
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"