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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST008400
species:
Medicago truncatula
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTCCGTCCCGAAATATAAGCA
miRNA*
TTTAGGTNTTGGGAAGGAAAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
GAGAGTGNGTG
TTTAGGTNTTGGGAAGGAAAG
GGGTAATCGAGTAATTCCAGATAAAGAAAAAAAAAGTGGAGGGCATCATTGTCCAGTGATAAGGCTGA
CAAAATAGATCAAAATGTATACAATATTTGTATTGTCTAAATGTGTACTTTTGAAAAAAATTGTAAGCTCAATCGAGTCTAAAAATATACTTTTAAAGGT
TTTCTTAGAAATGTGAACACAAATTATTATTGGAATATTTTCAGTCAAGTCTCATAAAACATCTATATGTACTCC
CTCCGTCCCGAAATATAAGCA
AAAA
AAAC
dot-bracket secondary structure
.........((
((((.((.((((((.(((..(
(((((..((.(((..((((.................))))(((((....))))).((.((.(((((((
(((((((..((((((((((.((((((....)))))).))..(((((((((((((((...(((.((.((((....)))).))..)))....))))))))))
..((.((....)).)))))))...)))).))))..))))))..))).))))).))...))...))).))))))))
.))).)))))).)).))))))
....
....
SIMILARITIES
miRBase
osa-MIR1862a
:
0.00006
PMRD
osa-miRf10322-akr
:
0.0000003
microPC
miR1439
:
0.0002
UniProt
no hits
RFAM
MIR1122: 0.000005
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record