miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST002758
species: Trifolium pratense
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Trifolium pratense Trifolium Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACTCTTCTTCTTCCTCTTCAT

miRNA*
GTTGAGGGAGAAGGCCGACTTG

mismatches: 5
bulges: 1

View larger
pre-miRNA
TGCATCTCTTAACTCTTCTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCA
ATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCAC


dot-bracket secondary structure
.....((.((((.((.(((((((((((..((..((((...(((..((.((((....)))).))...((...(((((((.((...(((((((.((.(((((
....)).)))..)).....)))))))....)).)))))))..)).)))....))))..))..)))))))))))..)).)))).))....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P17067|CAHC_PEA: 2e-19

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;