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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Pseudoroegneria spicata
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST000996
species:
Hordeum vulgare
miRNA family:
MIR1439
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTTGGGACAGAGGGAGTATG
miRNA*
TACTCCCTCCGTATCAAAATA
mismatches:
2
bulges:
0
View larger
pre-miRNA
GATAATAGTTTTG
TACTCCCTCCGTATCAAAATA
AGTGTCGCTGATCCTAGTATAAAATTTGTACTAATTTAGTCATCACTTTGTGACACTTA
TTTTGGG
ACAGAGGGAGTATG
CCGAACTTCT
dot-bracket secondary structure
......(((((((
(((((((((.((.((((((((
((((((((((((..((((((((...)))))))).....)))).......))))))))))
)))))).
)).)))))))))))
..)))))...
SIMILARITIES
miRBase
osa-MIR1862d
:
0.00002
PMRD
osa-miRf11090-akr
:
0.000006
microPC
miR1439
:
0.00002
UniProt
no hits
RFAM
MIR1122: 2e-40
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record