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Species belonging to selected taxon:
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Triticum aestivum
ABOUT THIS RECORD
ID:
MNEST054757
species:
Triticum monococcum
source:
PMRD, original name:
tmo-miR1122
Taxonomy by NCBI:
Triticum monococcum
Triticum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCCAAAATTGTT
miRNA*
GAATTTTGGGATGGAGGGAATACT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTTTGGCCTACATAGCCCACTTTTG
TACTCCCTCCGTCCCAAAATTGTT
GTCTTAAATTTGTCTAAATATGGATGTATGTAGTTACATTTTAGTGTTAGA
TACATCCGTATCTAAACAAATGTAAGACAA
GAATTTTGGGATGGAGGGAATACT
ACCTCATATTTAGTATAAAATTTTGA
dot-bracket secondary structure
....(((.......))).......(
((.((((((((((((((((((.((
((((((.((((((.((.((((((((((((.((...((((....)))))).)
))))))))))).)).)))))).))))))))
.)))))))))))))))))).))).
..........................
SIMILARITIES
miRBase
tae-MIR1122
:
8e-28
PMRD
hpi-miR1122
:
3e-33
microPC
miR1122
:
0.0000006
UniProt
no hits
RFAM
MIR1122: 2e-71
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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