miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ciona intestinalis, Molgula tectiformis, Ciona savignyi, Halocynthia roretzi



ABOUT THIS RECORD

ID: MNEST009066
species: Halocynthia roretzi
miRNA family: miR-4154
source: miRNEST

Taxonomy by NCBI:
Halocynthia roretzi Halocynthia Pyuridae Stolidobranchia Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGTTGGTTTTCGGAGCGCG

miRNA*
TGCATGGAAATAATGGAAT

mismatches: 4
bulges: 2

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pre-miRNA
TGCATGGAAATAATGGAATAGGACCTCGGTTCTATTTTGTTGGTTTTCGGAGCGCGAGGTAATGA

dot-bracket secondary structure
.((.((((((((((((((((((((....))))))))))))).)))))))..))............


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM SSU_rRNA_eukarya: 3e-25
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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