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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST002819
species: Vitis shuttleworthii
miRNA family: MIR168
source: miRNEST

Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
TATGGTTCTTACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATGGGTTG
CTGAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGGTGATGTGATG


dot-bracket secondary structure
........((((.((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...(((((((((.....))))))
))).))))).))...))))).)))))))))).))))).)))))).)).)))).......



SIMILARITIES
miRBase vvi-MIR168: 2e-68

PMRD vvi-miR168: 2e-68

microPC miR168: 2e-55
UniProt no hits

RFAM MIR168: 4e-76
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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