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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST008310
species:
Vitis vinifera
miRNA family:
MIR160
source:
miRNEST
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCTGGCTCCCTGAATGCCAT
miRNA*
GGCATGAGGGGAGTCAAGCAG
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTCGTCTCGGAATATTGTTCT
GCCTGGCTCCCTGAATGCCAT
CTAAGAAGCTTGTTAAAGAGTGTTGACAACCTTCCTATTT
GGCATGAGGGGAGTCAAG
CAG
GCGAAACACATGGTGATC
dot-bracket secondary structure
((((((..(((((...)))))
((.(((((((((..((((((.
.((.((((.(((((((......))))))).)))).))..)
)))))..))))))))).)
).)
))))).(((...)))...
SIMILARITIES
miRBase
vvi-MIR160b
:
4e-53
PMRD
vvi-miR160e
:
4e-53
microPC
no hits
UniProt
no hits
RFAM
mir-160: 0.0000000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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