ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR394
source: miRBase, original name: vvi-MIR394b (MI0006555)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAACC mismatches: 2 bulges: 0 |
pre-miRNA
ACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTT
dot-bracket secondary structure
(((((((((.((((((.(.(((((((((((((......(((((......)))))....)).))))))))))).).))))))..))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
ACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAACCAAGCTCTGTT
dot-bracket secondary structure
(((((((((.((((((.(.(((((((((((((......(((((......)))))....)).))))))))))).).))))))..))))))))).
SIMILARITIES| miRBase tcc-MIR394a: 0.000000000001 PMRD vvi-miR394b: 7e-48 microPC miR394: 1e-34 | UniProt no hits RFAM MIR394: 1e-46 |
Identical with: vvi-miR394b from PMRD (MNEST054852) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
