miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST002816
species: Vitis shuttleworthii
miRNA family: MIRf1133
source: miRNEST

Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAAAATCATCCCCCATGCTGT

miRNA*
TGCTCAGGGTGATGAGTTTGGT

mismatches: 5
bulges: 1

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pre-miRNA
ACTATCCGAGACAAAATCATCCCCCATGCTGTTTCATGGTTCACAGGGGAGGCTGCTCAGGGTGATGAGTTTGGTGACATGGA

dot-bracket secondary structure
....((((...((((.(((((.(((..((.(((((.((.....))...))))).))...))).))))).))))......))))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf11461-akr: 0.00000000000007

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





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