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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST041707
species:
Vitis vinifera
source:
miRBase, original name:
vvi-MIR3629b
(
MI0016023
)
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCTGCTGAGAAAATGTAGGA
miRNA*
CGGTTTCTCAGCAACCAA
mismatches:
3
bulges:
3
View larger
pre-miRNA
TTTGTTTTCGTC
CGGTTTCTCAGCAACCAA
ACAGGGTTCATTCGATTTTGAAATTCCTACATCGGATGCTGGGTGTT
GGCTGCTGAGAAAATGTAGGA
AG
AGGGA
dot-bracket secondary structure
....(((((.((
(..((((((((((.((((
.(((....((((((((...(......)...)))))))))))....))
)).)))))))))).....)))
.)
)))).
SIMILARITIES
miRBase
vvi-MIR3629c
:
0.000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
Solexa
references
[
1
] Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J,
Plant J. 62:960-976(2010).
,
"Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis"