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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST008324
species:
Vitis vinifera
miRNA family:
miR396a
source:
miRNEST
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTTCAAGAAAGCTGTGGGAAA
miRNA*
TTCCACAGCTTTCTTGAACTT
mismatches:
0
bulges:
0
View larger
pre-miRNA
TCTCTGCAAGTCCTGCCATGCTT
TTCCACAGCTTTCTTGAACTT
CTTCTCCCTGTTTGGTGGTCTCCTACGTTTACCCATCCACTGAA
GTTCAAGAAAGC
TGTGGGAAA
CCATGGCTTTTCAGGACTTC
dot-bracket secondary structure
.......(((((((((((((.((
(((((((((((((((((((((
(........((.((..((...))..))...)).........)))
))))))))))))
)))))))))
.)))))).....))))))).
SIMILARITIES
miRBase
vvi-MIR396b
:
1e-56
PMRD
vvi-miR396b
:
1e-56
microPC
miR396
:
0.0000001
UniProt
no hits
RFAM
MIR396: 1e-53
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record
deep sequencing data evidence