miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046494
species: Cichorium intybus
source: microPC, original name: miR167

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTGG

miRNA*
 AGGTCATCCTTGCAGCTTCA

mismatches: 3
bulges: 0
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pre-miRNA
 TGAAGCTGCCAGCATGATCTGGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAAAGTTCTATATATAGTCAAATG
TCTTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAGGTCATCCTTGCAGCTTCA

dot-bracket secondary structure
.((((((((.((.((((((((((...(((...((.....(((((((.....((((((((......))))))))......((.((.((((((..(((((..
.(.......)....)))))..)))))).))...))...)))))))......))....)))..)))))))))).)).)))))))).


SIMILARITIES
miRBase vvi-MIR167a: 0.0000006

PMRD vvi-miR167a: 0.0000006

microPC miR167: 2e-102		UniProt no hits

RFAM MIR167_1: 0.00001

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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