miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST041536
species: Solanum lycopersicum
miRNA family: MIR169
source: miRBase, original name: sly-MIR169c (MI0008363)

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CAGCCAAGGATGACTTGCCGA

miRNA*
GGCAGGTCATCTTTGGCTACA

mismatches: 1
bulges: 0

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pre-miRNA
GTCTAGAGAGTTATTGTATGAAGAGGTAGGGAGTGGAGTGCAGCCAAGGATGACTTGCCGAGATGTTGTAGCCTAATGCAATGACATATCGGCAGGTCAT
CTTTGGCTACATTTTATTCTCTCCTATTCATGTAAAACTTTATAGAC

dot-bracket secondary structure
(((((.((((((.(((((((((.(((.(((((((((((((.((((((((((((((((((((.((((..(.((.....)).)..)))).))))))))))))
)))))))).)))))))))))))))).))))))))))))))).)))))

UniProt no hits

RFAM MIR169_2: 0.000000009

Identical with: sly-miR169c from PMRD (MNEST054549)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"