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Species belonging to selected taxon:
Actinidia chinensis
,
Actinidia deliciosa
,
Actinidia eriantha
,
Antirrhinum majus
,
Barnadesia spinosa
,
Cichorium intybus
,
Coffea canephora
,
Fraxinus excelsior
,
Gerbera hybrid cultivar
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Ipomoea batatas
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Panax ginseng
,
Parthenium argentatum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Zinnia violacea
,
Capsicum annuum
,
Carthamus tinctorius
,
Catharanthus roseus
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cichorium endivia
,
Artemisia annua
,
Helianthus annuus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST046730
species:
Solanum lycopersicum
miRNA family:
MIR167
source:
microPC, original name:
miR167
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA
miRNA*
GATCATGTGGTTGCTTCA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGAAGCTGCCAGCATGATCTA
AACTTACCTATAAATTTATATTAAGGCAAGATCA
GATCATGTGGTTGCTTCA
dot-bracket secondary structure
.(((((.((((.((((((((.
..(((.(((.(((.......)))))).)))...)
))))))))))).))))).
SIMILARITIES
miRBase
vvi-MIR167e
:
0.00000005
PMRD
vvi-miR167e
:
0.00000005
microPC
miR167
:
5e-36
UniProt
no hits
RFAM
MIR167_1: 0.0000009
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
download this record
deep sequencing data evidence