miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003025
species: Artemisia annua
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Artemisia annua Artemisia Artemisiinae Anthemideae Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTTCT

miRNA*
 AAGAAGAAGAAGAAGAAGAAG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 ACATCATCATCATCATCATCATCATCATCATCATCATCTTCTATAGCGGTTGCACCTCCTAAAAAACTTAAAGTATCAACTAGCAGGGGAAGCAGGATGA
AAACCCTCACCAATACCCGACTTGTCAAACCTCCTAAAAAAAAACTAAAAGCATCAACTTTAAGCACAACACCATCTGAAATTCCAAAGAGTCTGTATGA
TCTGCTTCAGAAAATAGCAAAATTTAGGGAGTCTTTAAAGCAGAACCCCAACAACCGTCATGCAAAAACCAAATTGGAATATCATGAGCCCTTGATTCAC
TGTTCTGTTGCTTACCACCTATCGATTCATGAGTTGCCACGTAACTGGGAATACGACCCCGAAGCCTCCTACGTTCCGAAGCCTCCTGCACCACCCAAAC
CCAAAACGGAGAAGAAGAAGAAGAAGAAGAAGATCAAGATAACCTGTATG

dot-bracket secondary structure
...........(((...(((.((.((.((.((.((.((((((...(((((((.((.................))..))))).)).(((...(((((((((
......)))...((((..(((((.................................................................))))).))))..
...(((((.(((..(((.....(((.(((.((......((((((((.....(((..((((((......(((...))).....))))).)..)))......
.)))))))).......))...(((((((...((((((...))))))..)))).)))))).))).....)))..))).))))).))))))....)))....
((.....)))))))).)).)).)).)).)).)))...)))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q8TV08|RS15_METKA: 0.00000007

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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