miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002940
species: Centaurea maculosa
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGTGGACATACTGTCAACGG

miRNA*
 TTGGCATTCTGTCCACCTCC

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TCAATTCATGGCGGTTTAATAAAGGGTTTCCTGCAGATTTCTTTGGCATTCTGTCCACCTCCCTATTCATGTATCAAACCCCACTATAGGAAAAGCTAAA
AAGAAAGAAAAAGAAAAAGAAACCCGTGTGTGTAATTAGGGTTTCGTAGTTTGCTAAGAAAAAAAAAAGAAAAAAGAAAGAATCTAAGGCAAGATTTTTT
CTTTTGTGTGTGTAATTAGTGTGTGGAGGTGGACATACTGTCAACGGAGCTCTGTTGGTATCTCTTTGTAAAACCCTCTTGAAGTT

dot-bracket secondary structure
....((((.((.(((((.((((((((...((.(((((.((((((((((...(((((((((((.(((((.((((...........)))).)))((((((..
..................(((((((..((.....))..))))))).))))))(((((..............((((((((((((((......)))))))))
)))))..........))))).)).)))))))))))...)))))).)))).))))).))...)))))))).))))).)).))))...


SIMILARITIES
miRBase ptc-MIR394b: 0.000000000000004

PMRD ptc-miRf10096-akr: 0.000000001

microPC miR394: 0.00006		UniProt no hits

RFAM MIR394: 0.00002		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;