miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045211
species: Centaurea solstitialis
source: microPC, original name: miR530

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCACCT

miRNA*
GTGCAGGACAAGTGCA

mismatches: 2
bulges: 1

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pre-miRNA
TGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAGGT
GGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCA


dot-bracket secondary structure
.(((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).))))
)))))))...))))))))))))))))))))).))))))).



SIMILARITIES
miRBase ptc-MIR530a: 0.0004

PMRD ptc-miRf11026-akr: 0.0004

microPC miR1030: 2e-33
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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