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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001306
species: Lactuca saligna
miRNA family: MIR319
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGTGAAGGGAGCTCCTC

miRNA*
 GGAGCTCTCTATCGCCTCAACC

mismatches: 2
bulges: 1
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pre-miRNA
 ATATTTATGGTTGGAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATG
GTGTTGTAGTGTGCATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTCCTCCCATGATCA

dot-bracket secondary structure
....((((((..((((((((((.(((((((((.((((((((((.(((((..........((((((((.((((((((((...((((...(((((((((((.
..))))....)))))))...))))...)))))))).)))))))))).)))))..)))))))))).)))))))))))))))))))..))))))...


SIMILARITIES
miRBase ptc-MIR159e: 0.0006

PMRD ptc-miR159e: 0.0006

microPC miR159: 3e-95		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR159 from microPC (MNEST045899)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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