ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTCT miRNA* AGCTCCTTGAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
AGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGG
CTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).))
..).)))).))))).)).)))..))))))..))).)))))))).)))))))..))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGAGCTCCTTGAAGTCCAATAGAGGATCTGAGTGGGAATATCGAGCTGCTGGTCTATGGATCCCTCAAGTCCTATCTTTGTTGTTGTATAGGCTTTGTGG
CTTGCATACGCCAGGAGATTCATTATCCTTTTTCTGATCCTTTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.((((((((.(((.((((.((..(((((.(((((.((((.(..((.((((.((((((.........).))))).)))).))
..).)))).))))).)).)))..))))))..))).)))))))).)))))))..))))))))))
SIMILARITIES| miRBase rco-MIR159: 0.0000000001 PMRD vvi-miR159c: 0.00000003 microPC miR159: 2e-89 | UniProt no hits RFAM MIR159: 0.000000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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