miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001351
species: Lactuca virosa
miRNA family: miR171f
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATGTTGGAATGGCTCAATC

miRNA*
 TTGAGCCGTGCCAATATCATG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTGTTGGAGATGGTAACGTGATGATGTTGGAATGGCTCAATCAAATCAGATCTCCCCGGATGAATCAACAGGGTGTTTTAGTTTGATTGAGCCGTGCCAA
TATCATGAACTACTGTTAATTTGTA

dot-bracket secondary structure
........(((((((..((.((((((((((.(((((((((((((((.(((...(((..((....))....)))...))).))))))))))))))).))))
))))))..)))))))))........


SIMILARITIES
miRBase tcc-MIR171f: 0.0000000001

PMRD vvi-miR171i: 0.0000000004

microPC miR171: 4e-44		UniProt no hits

RFAM MIR171_1: 0.000000007		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST045103)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;