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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041752
species: Brachypodium distachyon
miRNA family: MIR167_1
source: miRBase, original name: bdi-MIR167d (MI0018102)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTGA

miRNA*
 AGATCATGTTGCAGCTTCACT

mismatches: 0
bulges: 1
View larger
pre-miRNA
 TGGACGGCTCAATTTGATGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGATCACCGTCCAACGTAACCGAACACATGTCGATCGACTTCCGATTGCGC
CGGTTATCTTGGTAGGAATATATATATATGAGCTTCCATTGCAAGGGTTCTTCAGATCATGTTGCAGCTTCACTCTCTCATCACCACCGAAAGATCCAAA
TTAA

dot-bracket secondary structure
((((...((...((((.(((((((((((..(((((((((.((((((((((((..(((..((((.(((((((.......((((((((.....)))))).))
))))))).))))..((((((((....))))...))))........)))...)))))))))))))))))))))..)))))).))))).)))))).))))..
....


SIMILARITIES
miRBase sbi-MIR167c: 0.0000000000007

PMRD sbi-miR167c: 0.0000000000002

microPC miR167: 0.00001		UniProt no hits

RFAM MIR167_1: 0.000000000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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