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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST000504
species:
Curcuma longa
miRNA family:
MIRf756
source:
miRNEST
Taxonomy by NCBI:
Curcuma longa
Curcuma
Zingiberaceae
Zingiberales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATCATCTGGCAGTTTCAAT
miRNA*
TGAAGCTGCCAGCATGATCTGG
mismatches:
1
bulges:
1
View larger
pre-miRNA
TGAATTGTTGGAATGAAGAGGT
TGAAGCTGCCAGCATGATCTGG
TCATGTAGTTCCTTCTGCTTGCCTTTTCTTTGAAAGATTTTCGCTAAAAAAAAGTC
ATCTTTAATTCGAGTGTTTCATCGCATCAATTCTTTTTTCACGTTGTAACTAGTTTTAAGTTTTGCCGCCTTCTCTCCTTCCTTGGTATCTCTATATTAA
ATCTTCGAAATGAATTCTGCAGAGTTTCAATCTGATTTCTATTAGAAAAGAAAAGAAACAAAAAAAAATTTAGTGTTCGTGTTTGCAGGTATCTGTGGAA
GAAATAGTGCAAGTTTTGATTTCTCAGGAATTAAGGATAAAGAAACTTTAATTATCTAAAAGTCTAATAATGATTGATCAAATAATTAAATTTTCCCTTA
AATTCAAGAGAGCGAAGAGGAGTAGGCATACCTTGTTTTCATTTCATC
AGATCATCTGGCAGTTTCAAT
CCCTCAATTCACCAACAGA
dot-bracket secondary structure
....(((((((..(((((((((
((((((((((((.(((((((((
(.(((.((.......(((((((.(((((((((.(((((((.(((((.(((((((..
....((.((.(((........))).)).))..)))))))..((.((.((((.......)))).)).))..((((.(((......(((((((......(((
((...((((.((((((.......(((((..(((..(((((...))))))))...))))).......))))))...)))).))))).)))))))...))))
))).))))).)))))))...(((((..(((((((((.....((((.(((((((((.....((((.......))))......))))))))).)))))))).
)))))..)))))))))))))))))))))........)).)))...)))
)))))))))))))))))))).
.))))..))))))))))).
SIMILARITIES
miRBase
sbi-MIR167c
:
0.000000007
PMRD
vvi-miR167a
:
0.000000007
microPC
miR167
:
0.00003
UniProt
no hits
RFAM
MIR167_1: 0.0000001
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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