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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001015
species: Hordeum vulgare
miRNA family: miR171e
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTGGCTCGACTCACTCAGA

miRNA*
TGATTGAGCCGTGCCAATATC

mismatches: 3
bulges: 0

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pre-miRNA
GATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGCGGCGGCGGTTCTGATTGAGCCGTGCCAATATCTT
AGTGCTCTTTCATGCAC


dot-bracket secondary structure
..((((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))).)
)))))).))))).))).



SIMILARITIES
miRBase hvu-MIR171: 7e-61

PMRD hvv-miR171: 9e-39

microPC miR171: 9e-39
UniProt no hits

RFAM MIR171_1: 0.000000000002
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046135)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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