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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST046601
species:
Hordeum vulgare
miRNA family:
MIR444
source:
microPC, original name:
miR444
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCTGCCTCAAGCTTGCTGC
miRNA*
ACCAAGCATGAGGCAACAACT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GC
ACCAAGCATGAGGCAACAACT
GCAGTACTTGTGGGGAAGGCACAAGTAGGACACCAACATTACCTGCAAGCAAGACGCAAAATTAATAGAACATCACC
ATACTTGTGGCTTTCTTGCAAGTCGTGCAG
TTGCTGCCTCAAGCTTGCTGC
dot-bracket secondary structure
((
(.(((((.(((((((.(((((
(((..(((((..((((((.((((((((((...................((.....))..........(.....).))
.)))))))).))))))..)))))..)))))
))).))))))).))))).)))
SIMILARITIES
miRBase
hvu-MIR444a
:
6e-59
PMRD
tae-miR444
:
6e-56
microPC
miR444
:
3e-82
UniProt
no hits
RFAM
MIR444: 6e-81
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record