ABOUT THIS RECORDspecies: Leymus cinereus x Leymus triticoides
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Leymus cinereus x Leymus triticoides Leymus Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTTCCTAAAT miRNA* TTAGAAACGGAGGGAGTAGAT mismatches: 1 bulges: 0 |
pre-miRNA
GTAGATAGTTGCTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTCCAATATGAACCACATACGGAGCAAAATGACTGATTCAACACTTTAAAA
TACGTCTATATACATCCATATGTAGTCCGTATTGTGAAATCTCTAAAAGGACTTATATTTAGAAACGGAGGGAGTAGATAACAGCTT
dot-bracket secondary structure
.......((((((((((((((((((.(((((((((((((((((((((((((((((((((.((.(((((.(((.......(((..(((...........))
)..)))........))).))))).)).))))))).).))))))))))))))))))))))))).)))))))))))))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGATAGTTGCTACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGAGATTCCAATATGAACCACATACGGAGCAAAATGACTGATTCAACACTTTAAAA
TACGTCTATATACATCCATATGTAGTCCGTATTGTGAAATCTCTAAAAGGACTTATATTTAGAAACGGAGGGAGTAGATAACAGCTT
dot-bracket secondary structure
.......((((((((((((((((((.(((((((((((((((((((((((((((((((((.((.(((((.(((.......(((..(((...........))
)..)))........))).))))).)).))))))).).))))))))))))))))))))))))).)))))))))))))).)))).....
SIMILARITIES| miRBase tae-MIR1126: 8e-31 PMRD tae-miR1126: 8e-31 microPC miR1436: 1e-17 | UniProt no hits RFAM MIR1122: 1e-48 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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