miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003999
species: Oryza sativa
miRNA family: MIRf528
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGTACTAGGATGTGTCACGT

miRNA*
 GTGACACATCCTAATACAACG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 AAGTATGCCTACTCCCTTCCATCCCCAAGAAAAAAAGGCAACCTAGTACTAGAATGTGACACATCCTAATACAACGAATCTGGACATAGAGTATGTACAG
ATTCGTTGTACTAGGATGTGTCACGTCGTAGTACGAGGTTGAGTTTTTTTTGGAATAGAGGGAGTAGATATTTACCCN

dot-bracket secondary structure
((((((..((((((((((......((((((((((....((((((.((((((..(((((((((((((((.(((((((((((((.(((((...))))).)))
)))))))))).)))))))))))))))..)))))).))))))..))))))))))....)))))))))))))))).....


SIMILARITIES
miRBase osa-MIR1862g: 0.00000000001

PMRD osa-miRf10463-akr: 0.00000000000004

microPC miR1862: 0.000009		UniProt no hits

RFAM MIR1122: 2e-25		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record




Liczniki na strone;