ABOUT THIS RECORDspecies: Oryza sativa
source: miRBase, original name: osa-MIR2097 (MI0010557)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGATGGGACGGGCAGGGAAG miRNA* TTCTTCGTGTCGCATTTCTTT mismatches: 4 bulges: 1 |
pre-miRNA
GTGGGGAAGAGATGGGACGGGCAGGGAAGGAAGTAGATGGATAGAGTTTGGGGATAGGAGGGAAGGGGATAGATTTGGTTGTTTTTCGGAAAAAAAAAAA
CCTTGTGTTTTTCATGTTTACAGTGCTGCCCCTAAGAGCAGAATTTTCTCTTCTTCGTGTCGCATTTCTTTAAAAGC
dot-bracket secondary structure
.....(((((((((.((((.(.(((((..((((....((.......(((((((.(((.(.(((..(..(.(.((..((((.(((((......))))).))
))..)).).)..)...)))....).))).)))))))..))....))))..)))))).)))).)))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
GTGGGGAAGAGATGGGACGGGCAGGGAAGGAAGTAGATGGATAGAGTTTGGGGATAGGAGGGAAGGGGATAGATTTGGTTGTTTTTCGGAAAAAAAAAAA
CCTTGTGTTTTTCATGTTTACAGTGCTGCCCCTAAGAGCAGAATTTTCTCTTCTTCGTGTCGCATTTCTTTAAAAGC
dot-bracket secondary structure
.....(((((((((.((((.(.(((((..((((....((.......(((((((.(((.(.(((..(..(.(.((..((((.(((((......))))).))
))..)).).)..)...)))....).))).)))))))..))....))))..)))))).)))).)))))))))......
SIMILARITIES| miRBase osa-MIR2097: 6e-78 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
