miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042352
species: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR2118h (MI0011258)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCTGATGCCTCTCATTCCTA

miRNA*
 GGAATGAGAACATGAAGGAAAG

mismatches: 2
bulges: 2
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pre-miRNA
 GGAAGAGGAAGAAAGAGAGGATCTCAGAAATGTAGGAATGAGAACATGAAGGAAAGTCTAAGAGCTAATGTCTCCTCTACATTGGAGGTCGAGACTTAGT
TTCATGTTTTCCTGATGCCTCTCATTCCTATGGTTCTAGGGTGCTCCTTCCTCTTCC

dot-bracket secondary structure
(((((((((((.....(((.(((..((((..((((((((((((.(((..(((((((.(...(((((((.(((((((((.....)))))...)))))))))
))...)))))))).)))..))))))))))))..))))..))).))))))))))))))


SIMILARITIES
miRBase osa-MIR2118k: 8e-46

PMRD zma-miR2118e: 0.000000000002

microPC no hits		UniProt no hits

RFAM MIR2118: 2e-84

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"



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