miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042359
species: Oryza sativa
miRNA family: MIR2118
source: miRBase, original name: osa-MIR2118o (MI0011265)

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCCTGATGCCTCCCAAGCCTA

miRNA*
 GGCATGGGGACATGAAGGAATG

mismatches: 4
bulges: 2
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pre-miRNA
 GGAAGAGGAAGAAAAGAGGGCCAAGGAGCAGTGGGCATGGGGACATGAAGGAATGCTTAAGCCCCTCTCCAATCCTCGCATGAGATTGGAGATGGAGTTA
TGAGTTCTCCTGATGCCTCCCAAGCCTATTGTTCCTTGGTGCTCCTTCCTCTTCC

dot-bracket secondary structure
(((((((((((....(((.(((((((((((((((((.(((((.(((..((((..((((((((((.(((((((((.((....))))))))))).)).))).
)))))..)))).))).).)))).))))))))))))))))).))))))))))))))


SIMILARITIES
miRBase osa-MIR2118r: 0.000000000008

PMRD zma-miR2118d: 0.0000001

microPC no hits		UniProt no hits

RFAM MIR2118: 2e-83

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH, Genome Res. 19:1429-1440(2009)., "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"



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