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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004345
species: Oryza sativa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCACCTAC

miRNA*
 AGGTGCAGAGGCAGATGCAAC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACAC
AATGTTGTTCCTGGTCCCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTGTGTCATA

dot-bracket secondary structure
..((((((.((.(((((((((..(((((((((..((.((((((..(((((((((...((....)).((((..((..((((.....)))).))..))))..
..)))))))))......))))))..))..)))))))))..))))))))).)).)))))).


SIMILARITIES
miRBase osa-MIR530: 1e-78

PMRD osa-miRf10677-akr: 3e-76

microPC miR530: 3e-76		UniProt no hits

RFAM MIR530: 0.00000001		most similar mature miRNAs

Identical with: miR1030 from microPC (MNEST044806)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence




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