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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046774
species: Oryza sativa
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCACAGGCTTTCTTGAACTG

miRNA*
 GTTCAAGAAAGTCCTTGGA

mismatches: 2
bulges: 0
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pre-miRNA
 TCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTA
GGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGA

dot-bracket secondary structure
((((..((((((((((((((((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.((((((((....))))
))))))))))).))))).)))))........))).))))))))))))))))..))))


SIMILARITIES
miRBase osa-MIR396f: 8e-86

PMRD osa-miR396f: 8e-86

microPC miR396: 0.000000002		UniProt no hits

RFAM MIR396: 2e-84

Identical with: osa-MIR396f from miRBase (MNEST042032)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence




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