miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST046171
species: Panicum virgatum
source: microPC, original name: miR160

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGCCTGGCTCCCTGTATGCC

miRNA*
CGTGCGAGGAGCCAAGCA

mismatches: 3
bulges: 0

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pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAGCCAGCCCAGTCGAGCTCCCCCAGGATTAGCTGTGGGCGTGTACTACGTTGCTGGCTCTACTGC
GGATGGCGTGCGAGGAGCCAAGCA

dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..((((((.(((..(((...((.(((.(((......))).))).))..)))..))))))))).)))).))
)..))))))))).))))))).)).

UniProt no hits

RFAM mir-160: 0.000000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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