ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIRf1229
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGAGTGAGCACACATGGTG miRNA* CTATGCGTGCTCACTTCTCTCT mismatches: 2 bulges: 1 |
pre-miRNA
GTGGGGTGGAGAAGAGGTGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGC
GTGCTCACTTCTCTCTCTGTCAGCCGTTAGAACTCTCTCTCGAT
dot-bracket secondary structure
.......(((((.(((.(((.(((((((((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).
)))))))).))))).)))))))))).)))...))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTGGGGTGGAGAAGAGGTGGAGGCTGACAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGC
GTGCTCACTTCTCTCTCTGTCAGCCGTTAGAACTCTCTCTCGAT
dot-bracket secondary structure
.......(((((.(((.(((.(((((((((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).
)))))))).))))).)))))))))).)))...))))))))....
SIMILARITIES| miRBase sof-MIR156: 7e-74 PMRD zma-miR156c: 2e-49 microPC miR156: 1e-50 | UniProt no hits RFAM mir-156: 2e-22 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046235) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
