miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046657
species: Saccharum officinarum
source: microPC, original name: miR156

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGAAGAGAGTGAGCAC

miRNA*
 GCTCACTTCTCTCTCTG

mismatches: 0
bulges: 2
View larger
pre-miRNA
 CAGAAGAGAGTGAGCACACATGGTGCCTTTCTTGCATGATGAACGATCGAGAGGTTCATGCTCGAAGCTATGCGTGCTCACTTCTCTCTCTG

dot-bracket secondary structure
(((((((((((((((((.((((((....(((..((((((......(((....)))))))))..))))))))).)))))))).))))).))))


SIMILARITIES
miRBase ssp-MIR156: 3e-47

PMRD zma-miR156o: 3e-38

microPC miR156: 3e-47		UniProt no hits

RFAM mir-156: 6e-18

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;