ABOUT THIS RECORDspecies: Saccharum officinarum
source: PMRD, original name: sof-miR319c
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGAGTGAAGGGAGCTCCA miRNA* GAGTGAAGGGAGCTCCA mismatches: 8 bulges: 0 |
pre-miRNA
TGAAGCAGCTCTTCCAAAAGACCACTGTTCCTCGGCGATGCACACTCAGATTTCACTGAAGGGGTCGCTGATGGAGACTGCAGGTAAGGCTCTACTAACT
GAGTAGGCTGCATTGCAGGAGCCACAGTATACTTGAGCCAGCTATTTGGATCAGATTCAGTATCTTGGAGTGAAGGGAGCTCCA
dot-bracket secondary structure
((((....((..((((((......(((((((((((((((.(....((((......))))..).)))))))).)))....))))....(((((.....(((
(....((((.(......).)))).))))......))))).....))))))..)).))))......((((((.......))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGAAGCAGCTCTTCCAAAAGACCACTGTTCCTCGGCGATGCACACTCAGATTTCACTGAAGGGGTCGCTGATGGAGACTGCAGGTAAGGCTCTACTAACT
GAGTAGGCTGCATTGCAGGAGCCACAGTATACTTGAGCCAGCTATTTGGATCAGATTCAGTATCTTGGAGTGAAGGGAGCTCCA
dot-bracket secondary structure
((((....((..((((((......(((((((((((((((.(....((((......))))..).)))))))).)))....))))....(((((.....(((
(....((((.(......).)))).))))......))))).....))))))..)).))))......((((((.......))))))
SIMILARITIES| miRBase gma-MIR159b: 0.0006 PMRD tae-miR319b: 6e-47 microPC miR159: 0.0006 | UniProt sp|Q0JIC2|GAM1_ORYSJ: 1e-26 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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