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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042485
species: Sorghum bicolor
miRNA family: MIR156
source: miRBase, original name: sbi-MIR156a (MI0001504)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACTTCTCTTTCTGTCA

mismatches: 1
bulges: 2

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pre-miRNA
TGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGCCGCGTGCTCACTTCTCTTTCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((.(((((.(((((...((((...))))...)))))..))))).)))))))).)))).))))))).


SIMILARITIES
miRBase zma-MIR156d: 5e-33

PMRD sbi-miR156a: 2e-42

microPC miR156: 4e-40
UniProt no hits

RFAM mir-156: 3e-41

Identical with: sbi-miR156a from PMRD (MNEST054393)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[3] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"




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