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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042515
species: Sorghum bicolor
miRNA family: MIR166
source: miRBase, original name: sbi-MIR166h (MI0010867)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AGGGGAATGTTGTCTGGCTCGGGGGCGCCGCCGCTCCGCTCCGCTCCTTCCTTCTCTGGTCTCTCTCTCTCCCCTAGTCTTCGCGCGCTTCCTCAATCTC
CATCGTCTCTTCCTCCTTCTCTTGGAGACCAGCAGGAGGACGGAGGCGGGTGGTGTAGATCTCGGACCAGGCTTCATTCCCCCCA

dot-bracket secondary structure
.((((((((..((((((..((((..(..((((((.((((....((((.((((((((((((((((....................................
.......................))))))))).))))))).))))))))))))))..)..))))..))))))..))))))))...


SIMILARITIES
miRBase zma-MIR166a: 7e-16

PMRD sbi-miR166h: 5e-29

microPC miR166: 0.000000002		UniProt no hits

RFAM mir-166: 9e-28

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"



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