ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR1432
source: PMRD, original name: sbi-miR1432
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTCAGGAGAGATGACACCGAC miRNA* GGGTGTCATCTCGCCTGAAGCA mismatches: 2 bulges: 1 |
pre-miRNA
GATAGGACATAGGAGGCGAGAGGGACGACGAGCCGTTGGTTTGTGGGTGTGCGTCCTATGCTCAGGAGAGATGACACCGACGTCGGACGGACCGGTCGAT
CCGCGCCGTGTCTGTCCGTCCGAAGTGGGTGTCATCTCGCCTGAAGCATAGGACTTACCAGCCCAGTACATCTCCCTGTTTTCA
dot-bracket secondary structure
....(((.(((((....((((...((.(((((((...)))))))(((((((.((((((((((((((.(((((((((((.((.(((((((((((((.((..
...))))).....)))))))))).)).))))))))))).)))).)))))))))).)))..)))).))...))))))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
GATAGGACATAGGAGGCGAGAGGGACGACGAGCCGTTGGTTTGTGGGTGTGCGTCCTATGCTCAGGAGAGATGACACCGACGTCGGACGGACCGGTCGAT
CCGCGCCGTGTCTGTCCGTCCGAAGTGGGTGTCATCTCGCCTGAAGCATAGGACTTACCAGCCCAGTACATCTCCCTGTTTTCA
dot-bracket secondary structure
....(((.(((((....((((...((.(((((((...)))))))(((((((.((((((((((((((.(((((((((((.((.(((((((((((((.((..
...))))).....)))))))))).)).))))))))))).)))).)))))))))).)))..)))).))...))))))))).))).
SIMILARITIES| miRBase sbi-MIR1432: 8e-102 PMRD osa-miR1432: 0.0006 microPC miR1318: 0.0006 | UniProt no hits RFAM no hits |
Identical with: sbi-MIR1432 from miRBase (MNEST042630) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
