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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST008496
species:
Sorghum bicolor
miRNA family:
MIR1875
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACAATGGAGTGAGGTGCAACG
miRNA*
TTGCACCTTGCTCCATTGTGG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GGCCTTGTTTACTTGGGTAAATTTCACTCTGTCCCCTGCAGTTCAGCATGGTTTTGCTTTGCCACTGCGATGTTCATTTCCA
TTGCACCTTGCTCCATTG
TGG
TATTGATGTTCTGCAGAAGCGAGTCCCTGTATCAAATAACTGTTGCAAGGTTGTTGGCATCGTCCATTGCCACACATGATACTATGCCACTAGCAGT
CGTCAGCTTCAACTGTGTGTTGTCGTATTGCATACACGGGTAGTAGGTGCATCAGCATTATAGCAGTTATTTGATACAGGAACTCTCCACTGTAGAAGTA
CAAACCC
ACAATGGAGTGAGGTGCAACG
CAATGAACAATATGGTAGCAGAGTGAAAGTCTGTGGAATTGCCGGGGGCAAAGTGAAATTTATCCGACTATT
TATTTGT
dot-bracket secondary structure
.....((..((.((((((((((((((((.(((((((.(((((((.(((.(((((((((((((.((((...((((((((....
((((((((((((((((((
(((
..(((...((((((((....((((.((((((((((((((((((((.((.((((...(((((....((((((.....((((((.(((.(((..(((((
...........)))))))).))).))))))........)))))).)))))..)))).)).)))))))))))))))))))).))))....))))))))...
)))..))
)))))))))))))))))))..
.))))))))...)))).))))))))))).))))).))))))).))))))).)))))))))))))))).))..
)).....
SIMILARITIES
miRBase
osa-MIR1875
:
0.00000000002
PMRD
osa-miR1875
:
0.00000000002
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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