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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003757
species: Zea mays
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTG

miRNA*
 GAGCTCCTATCATTCCAATGA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GATGCTTTGGGTTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGNNCGTTCCGAAGGGCTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTC
ATCATGTGTATATATGTAATCCATTGGGGGGAGGGTTTCTCTCGTCTTTGAGATNAGGNTTGTGGTTTGCATGACCGAGGAGCTGCACCGCCCCCTTGCT
GGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCCTGATCCACCCCT

dot-bracket secondary structure
.......((((((.((.(((((((((((.(((.(((((.((..((..((...(((.(((.((((...(((.((((.(((((....((((.(.(((.((((
(.......................((((((((....))))))))....)))))..)))..)))))....))))).)))).)))...)))).))).))).)
).))..)).))))).))).))))))))))).))..)))))).....


SIMILARITIES
miRBase zma-MIR159a: 5e-119

PMRD zma-miR159a: 5e-119

microPC miR319: 1e-17		UniProt no hits

RFAM MIR159: 5e-95		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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