miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST003506
species: Glycine max
miRNA family: MIR4414
source: miRNEST

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCTGCTGACTCGTTGGCTC

miRNA*
 TCCAACGATGCGGGAGCTGC

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AATTAGTTGTTTCTTGGATAATTAGAGTAGGGTTGTGTTCGAGGATTGGTGGAAGATATGGAAGGGGCTCACTTCAGTCCAGTCCGAGTCGGTGAAAAAT
GACTGAAACTCAGCTGCTGACTCGTTGGCTCGAGAGTTCACCATTAAGATAGATTGATGTTCGGCACTCACGCCATGTAATTAAGGTGGTGTGCTTCTGA
TCCAACGATGCGGGAGCTGCATTCAGTCGTGACTGTCACGTCTTGGACTGAAGGGGCCTCTTCGTCTCCTACATCCTTCACTCATACATACTTGCTTTTC
TTCAGGATATTGTTTTCTTTTTAATAGC

dot-bracket secondary structure
........((.(((((((.....((((((((..(((((..((((((..((((.((((...((((((((((.(((((((((((..((...((((.....((
(((((((...(((((.(((..(((((((.(((.((((.(((((((......(((((......(((......)))...)))))..))))))).)))).)))
.)))))))..))).)))))..))))))))).))))...))..))))))))))))))))))))))))).)))))))))).....)))))..))))))))..
))))))).))..................


SIMILARITIES
miRBase gma-MIR4414: 4e-68

PMRD vvi-miR319b: 0.00000000000002

microPC no hits		UniProt no hits

RFAM MIR159: 7e-27		most similar mature miRNAs

Identical with: gma-MIR4414 from miRBase (MNEST040629)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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