ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR396
source: miRBase, original name: lja-MIR396 (MI0010581)
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
GTCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATTCAATTGCATGCATGCCATGACACTCTTATTTTGCGGTTCAATAAAGCTGTGGGAAGATAT
AGATAGGG
dot-bracket secondary structure
..(((.(((((((..((((((((((((.((((((((((......((((((.....)))).)).........)))))))))).))))))))))))..))))
))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
GTCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATTCAATTGCATGCATGCCATGACACTCTTATTTTGCGGTTCAATAAAGCTGTGGGAAGATAT
AGATAGGG
dot-bracket secondary structure
..(((.(((((((..((((((((((((.((((((((((......((((((.....)))).)).........)))))))))).))))))))))))..))))
))).))).
SIMILARITIES| miRBase gma-MIR396a: 0.000000000000001 PMRD lja-miR396: 1e-56 microPC miR396: 0.000000000006 | UniProt no hits RFAM MIR396: 3e-48 |
Identical with: lja-miR396 from PMRD (MNEST048680) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang Y, Li P, Cao X, Wang X, Zhang A, Li X, Biochem Biophys Res Commun. 378:799-803(2009)., "Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules"
