miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST048775
species: Medicago truncatula
source: PMRD, original name: mtr-miR2088

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGCCTAGATTACATTGGAC

miRNA*
 CCAATGTAATCTAGGTCTAC

mismatches: 0
bulges: 0
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pre-miRNA
 TCTCTGTATCTCGAAGTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGT
AATCTAGGTCTACATCTGTTAAGTCTCTAAAGTATTCTGAAAGAGA

dot-bracket secondary structure
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....)))))))))
)))))))))))))))).)))))))).))......))).)).)))))


SIMILARITIES
miRBase mtr-MIR2088a: 3e-79

PMRD mtr-miR2088: 3e-79

microPC no hits		UniProt sp|O04197|COI1_ARATH: 0.00007

RFAM no hits

Identical with: mtr-MIR2088a from miRBase (MNEST040755)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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