miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051323
species: Phaseolus coccineus
source: PMRD, original name: pco-miR157

Taxonomy by NCBI:
Phaseolus coccineus Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 GTTCATGGTTACATAGAAGAAATTATTCTCCACGACAGTCAACT

mismatches: 10
bulges: 23
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pre-miRNA
 TTGACAGAAGATAGAGAGCATCCTTTGAGGCCAGCAACAGTGATTTGAGTTTCAAGATCTCAATGGGAAACTTTATTTCAATCACATGCTTGCCTCAAGG
TTTATTAATGTTCATGGTTACATAGAAGAAATTATTCTCCACGACAGTCAACTGCATTTTTGCGACGCCTCTCATTATGGCCAA

dot-bracket secondary structure
(((((..........((((((.(((((((((.((((...((((((.(((((((.............)))))))......)))))).)))).)))))))))
.......))))))...(((....((((.......))))....))).)))))..(((....)))...(((.........)))...


SIMILARITIES
miRBase vvi-MIR156i: 0.0006

PMRD lja-miR157c: 0.00000000004

microPC miR157: 0.0006		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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