miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041287
species: Populus euphratica
source: miRBase, original name: peu-MIR2916 (MI0012640)

Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGGACTCGAAGACGATCATAT

miRNA*
 ATGTTGCTTCTAGGAGTCCGCCA

mismatches: 3
bulges: 6
View larger
pre-miRNA
 TGGGGACTCGAAGACGATCATATACCATCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTCTAGGAGTCCGCCA

dot-bracket secondary structure
.((((((((((((.(((.(((...(((((((.(((.....(((.....)))..)))..)))).)))...))))))))))...)))))).)).


SIMILARITIES
miRBase no hits

PMRD peu-miR2916: 3e-47

microPC no hits		UniProt no hits

RFAM SSU_rRNA_eukarya: 5e-46

Identical with: peu-miR2916 from PMRD (MNEST051332)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"



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