miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051328
species: Populus euphratica
miRNA family: MIR2912
source: PMRD, original name: peu-miR2912b

Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTAGAACTCGAGATATGGGC

miRNA*
 CTATGTCTTAGCTTTCTATC

mismatches: 2
bulges: 3
View larger
pre-miRNA
 TCTAGAACTCGAGATATGGGCTGAACACTGAATAGTGTCTAGGCTGCAGGACAGATTTCGACTTCTCTTTTGTTGCTACAATTTGAACTTGAAAACGGCT
GTTTTGAATCTTAGACTCTTCATGAAAGTTTTAGGTCTATGTCTTAGCTTTCTATC

dot-bracket secondary structure
..(((((((.((((((((((((.((.(((....((.(((((((...((((((((.((((((.(((....((((....))))...))).))))))....))
))))))...))))))).)).......))).)).))))))))))))))..)))))..


SIMILARITIES
miRBase peu-MIR2912b: 3e-85

PMRD peu-miR2912a: 1e-19

microPC no hits		UniProt no hits

RFAM no hits

Identical with: peu-MIR2912b from miRBase (MNEST041285)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Li B, Yin W, Xia X, Biochem Biophys Res Commun. 388:272-277(2009)., "Identification of microRNAs and their targets from Populus euphratica"



Liczniki na strone;