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Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST045064
species:
Coffea canephora
miRNA family:
MIR396
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Coffea canephora
Coffea
Coffeeae
Ixoroideae
Rubiaceae
Gentianales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT
miRNA*
TTCAATAAAGCTGTGGGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTCCACAGCTTTCTTGAACT
GCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCGATGATGGCGG
TTCAATAAAG
CTGTGGGA
dot-bracket secondary structure
((((((((((((.(((((((
((((((.((.((((..((((((.....(((.(((....)))..))))))))))))).)).).))).))))
))))).))))
))))))))
SIMILARITIES
miRBase
bdi-MIR396d
:
0.00000002
PMRD
zma-miR396l
:
0.00000008
microPC
miR396
:
1e-56
UniProt
no hits
RFAM
MIR396: 0.000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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