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Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST048670
species:
Ipomoea nil
source:
PMRD, original name:
ini-miR157b
Taxonomy by NCBI:
Ipomoea nil
Ipomoea
Ipomoeeae
Convolvulaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAT
miRNA*
CGCTCATTGTGACCTGCCAA
mismatches:
7
bulges:
0
View larger
pre-miRNA
TTGACAGAAGATAGAGAGCAT
GCTAGAAATTACATTGATAAGCTATGTGGTTCAGAGACCAATCTTCTTATGAGTTCCAATAAGGAGTTGGTTTGTCCCC
CCACTGGTATTACGTCTTCAGGTTGACCCTTCACCACGAGGATCATATGTAATTCTCCTGCGG
CGCTCATTGTGACCTGCCAA
dot-bracket secondary structure
.((.(((...((((.((((.(
((..((((((((((((....((((.((((...(.(((((((.((((((((........))))))))))))))).)....
)))))))).....((((((.(((.((....)))))..)))))))).)))))))).))..))).
.)))).))))...))).)).
SIMILARITIES
miRBase
vvi-MIR156i
:
0.0006
PMRD
iba-miR157
:
1e-91
microPC
miR157
:
0.0006
UniProt
no hits
RFAM
no hits
Identical with:
ini-miR157a
from PMRD (
MNEST048669
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record