miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST041531
species: Solanum lycopersicum
miRNA family: MIR166
source: miRBase, original name: sly-MIR166a (MI0008358)

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 AGAATGTCGTCTGGTTCGAGA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GTTGAGGAGAATGTCGTCTGGTTCGAGATCTTTCATAAGAAAGGTAAATGAATGACAAGTTTTCATATATGTATCGTGAATGATTTCGGACCAGGCTTCA
TTCCCCTCAAC

dot-bracket secondary structure
(((((((.(((((..(((((((((((((((.(((((..((.(.(((.(((((.........))))).))).).))))))).)))))))))))))))..))
))).)))))))


SIMILARITIES
miRBase vvi-MIR166g: 0.0000000000004

PMRD sly-miR166a: 2e-58

microPC miR166: 0.000005		UniProt no hits

RFAM mir-166: 0.000000000007

Identical with: sly-miR166a from PMRD (MNEST054543)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence

references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"



Liczniki na strone;